- C - Cluster-wide installation
- U - User installation
- x.x.xx - Cluster-wide installation, latest version number
| Software | Description | Lichtenberg Darmstadt |
MaRC 2 Marburg |
Linux Cluster Kassel |
Skylla Gießen |
More Info |
|---|---|---|---|---|---|---|
| Abaqus | Finite elements analysis | 2019 | C | |||
| ABINIT | DFT suite | 8.11.1 | ||||
| ADF | Computational chemistry | U | ||||
| AMBER /Amber Tools | QM/MD-molecular simulation | C | C | |||
| ANSYS CFD / Structures | CFD / CSM / Multiphysics | 20.1 | C | HKHLR-Info | ||
| Autodock Vina | Molecular docking | C | ||||
| BLAST | Sequence similarity search | C | ||||
| Bowtie | Genome alignment and analysis | C | C | |||
| BWA | Sequence mapping | C | ||||
| cDNA-Cupcake | DNA sequence analysis | C | ||||
| CMTK | Computational morphometry toolkit | C | ||||
| COMSOL | CFD, CSM, Multiphysics | U | C | |||
| Emboss | Bioinformatics toolkit | C | ||||
| FastME | Phylogeny inference | C | ||||
| Gaussian | Computational chemistry | U | C | |||
| GÉANT | C | |||||
| GROMACS | Quantum chemistry | 2019.4 | C | |||
| Jellyfish | k-mer counting | C | ||||
| LAMMPS | Molecular dynamics | 2019.08.07 | U | |||
| Matlab | Numerical computing environment | R2019a | C | C | ||
| Meep | Electromagnetics | C | C | |||
| Minimap | Sequence alignment | C | ||||
| MPB | Meep photonic bands | C | C | |||
| MRBayes | Inference | C | ||||
| NAMD | Molecular dynamics package | C | ||||
| NWChem | Computational chemistry | 6.8.1 | C | C | ||
| OpenCV | Image recognition | C | ||||
| OpenFOAM | Solver framework for continuum mechanics | 1912 | ||||
| OpenMolcas | Quantum chemistry package | 20190507 | ||||
| ORCA | Quantum chemistry package | C | C | |||
| Proj | Geo protection library | C | ||||
| Proteinortho | Orthology detection | C | ||||
| Quantum Espresso | Compuational chemistry and materials modeling | 6.5.0 | C | |||
| S4 | Stanford stratified structure solver | C | ||||
| Samtools | Sequence alignment | C | ||||
| SMRTAnalysis | DNA sequence analysis | C | ||||
| Tinker | Molecular dynamics | C | ||||
| ToFU2 | DNA sequence analysis | C | ||||
| Tophat | Read mapper for RNA sequences | C | ||||
| TrinityRNASeq | RNA sequence anlysis | C | ||||
| Turbomole | Quantum chemistry | U | ||||
| VASP | Atomic scale material modeling | U | U | HKHLR-Info | ||
| Velvet | Sequence assembler | C | ||||
| ViennaRNA | RNA secondary structures prediction and comparison | 2.4.14 |
